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A
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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P
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R
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S
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T
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W
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X
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Y
A
add_property() (idpflex.cnextend.ClusterNodeX method)
Asphericity (class in idpflex.properties)
asphericity (idpflex.properties.Asphericity attribute)
AsphericityMixin (class in idpflex.properties)
C
cluster_trajectory() (in module idpflex.cluster)
cluster_with_properties() (in module idpflex.cluster)
ClusterNodeX (class in idpflex.cnextend)
ClusterTrove (class in idpflex.cluster)
code2profile() (idpflex.properties.SecondaryStructureProperty class method)
collapsed (idpflex.properties.SecondaryStructureProperty attribute)
colors (idpflex.properties.SecondaryStructureProperty attribute)
D
decorate_as_node_property() (in module idpflex.properties)
default_name (idpflex.properties.Asphericity attribute)
(idpflex.properties.EndToEnd attribute)
(idpflex.properties.ProfileProperty attribute)
(idpflex.properties.RadiusOfGyration attribute)
(idpflex.properties.ResidueContactMap attribute)
(idpflex.properties.SaSa attribute)
(idpflex.properties.SansProperty attribute)
(idpflex.properties.SaxsProperty attribute)
(idpflex.properties.SecondaryStructureProperty attribute)
disparity() (idpflex.properties.SecondaryStructureProperty method)
distance_submatrix() (idpflex.cnextend.ClusterNodeX method)
(in module idpflex.distances)
dssp_codes (idpflex.properties.SecondaryStructureProperty attribute)
E
e (idpflex.properties.ProfileProperty attribute)
(idpflex.properties.ResidueContactMap attribute)
(idpflex.properties.SecondaryStructureProperty attribute)
elements (idpflex.properties.SecondaryStructureProperty attribute)
end_to_end (idpflex.properties.EndToEnd attribute)
EndToEnd (class in idpflex.properties)
EndToEndMixin (class in idpflex.properties)
extract_coordinates() (in module idpflex.distances)
F
fit_at_depth() (in module idpflex.bayes)
fit_to_depth() (in module idpflex.bayes)
fractions (idpflex.properties.SecondaryStructureProperty attribute)
from_ascii() (idpflex.properties.SaxsLoaderMixin method)
from_crysol_fit() (idpflex.properties.SaxsLoaderMixin method)
from_crysol_int() (idpflex.properties.SaxsLoaderMixin method)
from_crysol_pdb() (idpflex.properties.SaxsLoaderMixin method)
from_dssp() (idpflex.properties.SecondaryStructureProperty method)
from_dssp_pdb() (idpflex.properties.SecondaryStructureProperty method)
from_dssp_sequence() (idpflex.properties.SecondaryStructureProperty method)
from_linkage_matrix() (idpflex.cnextend.Tree method)
from_mdtraj() (idpflex.properties.SaSaMixin method)
from_pdb() (idpflex.properties.AsphericityMixin method)
(idpflex.properties.EndToEndMixin method)
(idpflex.properties.RadiusOfGyrationMixin method)
(idpflex.properties.ResidueContactMap method)
(idpflex.properties.SaSaMixin method)
from_sassena() (idpflex.properties.SansLoaderMixin method)
from_universe() (idpflex.properties.AsphericityMixin method)
(idpflex.properties.EndToEndMixin method)
(idpflex.properties.RadiusOfGyrationMixin method)
(idpflex.properties.ResidueContactMap method)
(idpflex.properties.SaSaMixin method)
G
guess() (idpflex.bayes.TabulatedFunctionModel method)
H
histogram() (idpflex.properties.ScalarProperty method)
I
idpflex.bayes (module)
idpflex.cluster (module)
idpflex.cnextend (module)
idpflex.distances (module)
idpflex.properties (module)
idpflex.utils (module)
K
keys() (idpflex.cluster.ClusterTrove method)
L
leaf_ids (idpflex.cnextend.ClusterNodeX attribute)
leafs (idpflex.cnextend.ClusterNodeX attribute)
(idpflex.cnextend.Tree attribute)
load_cluster_trove() (in module idpflex.cluster)
load_tree() (in module idpflex.cnextend)
M
model_at_depth() (in module idpflex.bayes)
model_at_node() (in module idpflex.bayes)
N
n_codes (idpflex.properties.SecondaryStructureProperty attribute)
name (idpflex.properties.ProfileProperty attribute)
(idpflex.properties.ResidueContactMap attribute)
(idpflex.properties.SecondaryStructureProperty attribute)
namedtuplefy() (in module idpflex.utils)
nodes_above_depth() (idpflex.cnextend.Tree method)
nodes_at_depth() (idpflex.cnextend.Tree method)
P
plot() (idpflex.properties.ResidueContactMap method)
(idpflex.properties.ScalarProperty method)
(idpflex.properties.SecondaryStructureProperty method)
ProfileProperty (class in idpflex.properties)
propagator_size_weighted_sum() (in module idpflex.cluster)
(in module idpflex.properties)
propagator_weighted_sum() (in module idpflex.properties)
R
RadiusOfGyration (class in idpflex.properties)
RadiusOfGyrationMixin (class in idpflex.properties)
random_distance_tree() (in module idpflex.cnextend)
register_as_node_property() (in module idpflex.properties)
representative() (idpflex.cnextend.ClusterNodeX method)
ResidueContactMap (class in idpflex.properties)
rg (idpflex.properties.RadiusOfGyration attribute)
rmsd_matrix() (in module idpflex.distances)
S
SansLoaderMixin (class in idpflex.properties)
SansProperty (class in idpflex.properties)
SaSa (class in idpflex.properties)
sasa (idpflex.properties.SaSa attribute)
SaSaMixin (class in idpflex.properties)
save() (idpflex.cluster.ClusterTrove method)
(idpflex.cnextend.Tree method)
SaxsLoaderMixin (class in idpflex.properties)
SaxsProperty (class in idpflex.properties)
ScalarProperty (class in idpflex.properties)
SecondaryStructureProperty (class in idpflex.properties)
set_scalar() (idpflex.properties.ScalarProperty method)
T
TabulatedFunctionModel (class in idpflex.bayes)
temporary_file() (in module idpflex.utils)
to_ascii() (idpflex.properties.SaxsLoaderMixin method)
trajectory_centroids() (in module idpflex.cluster)
Tree (class in idpflex.cnextend)
tree (idpflex.cnextend.ClusterNodeX attribute)
W
weights_by_size() (in module idpflex.properties)
write_frame() (in module idpflex.utils)
X
x (idpflex.properties.ProfileProperty attribute)
(idpflex.properties.ResidueContactMap attribute)
(idpflex.properties.SecondaryStructureProperty attribute)
Y
y (idpflex.properties.ProfileProperty attribute)
(idpflex.properties.ResidueContactMap attribute)
(idpflex.properties.SecondaryStructureProperty attribute)
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