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A
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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P
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R
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S
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T
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V
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W
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X
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Y
A
Asphericity (class in idpflex.properties)
asphericity() (idpflex.properties.Asphericity property)
AsphericityMixin (class in idpflex.properties)
C
cluster_trajectory() (in module idpflex.cluster)
cluster_with_properties() (in module idpflex.cluster)
ClusterNodeX (class in idpflex.cnextend)
ClusterTrove (class in idpflex.cluster)
code2profile() (idpflex.properties.SecondaryStructureProperty class method)
collapsed() (idpflex.properties.SecondaryStructureProperty property)
colors (idpflex.properties.SecondaryStructureProperty attribute)
D
decorate_as_node_property() (in module idpflex.properties)
default_name (idpflex.properties.Asphericity attribute)
(idpflex.properties.EndToEnd attribute)
(idpflex.properties.ProfileProperty attribute)
(idpflex.properties.RadiusOfGyration attribute)
(idpflex.properties.ResidueContactMap attribute)
(idpflex.properties.SaSa attribute)
(idpflex.properties.SansProperty attribute)
(idpflex.properties.SaxsProperty attribute)
(idpflex.properties.SecondaryStructureProperty attribute)
disparity() (idpflex.properties.SecondaryStructureProperty method)
distance_submatrix() (idpflex.cnextend.ClusterNodeX method)
(in module idpflex.distances)
dssp_codes (idpflex.properties.SecondaryStructureProperty attribute)
E
e() (idpflex.properties.ProfileProperty property)
(idpflex.properties.ResidueContactMap property)
(idpflex.properties.SecondaryStructureProperty property)
elements (idpflex.properties.SecondaryStructureProperty attribute)
end_to_end() (idpflex.properties.EndToEnd property)
EndToEnd (class in idpflex.properties)
EndToEndMixin (class in idpflex.properties)
extract_coordinates() (in module idpflex.distances)
F
feature_vector() (idpflex.properties.ProfileProperty property)
(idpflex.properties.PropertyDict method)
(idpflex.properties.ScalarProperty property)
feature_weights() (idpflex.properties.ProfileProperty property)
(idpflex.properties.PropertyDict method)
(idpflex.properties.ScalarProperty property)
fit_at_depth() (in module idpflex.bayes)
fit_to_depth() (in module idpflex.bayes)
fractions() (idpflex.properties.SecondaryStructureProperty property)
from_ascii() (idpflex.properties.SansLoaderMixin method)
(idpflex.properties.SaxsLoaderMixin method)
from_crysol_fit() (idpflex.properties.SaxsLoaderMixin method)
from_crysol_int() (idpflex.properties.SaxsLoaderMixin method)
from_crysol_pdb() (idpflex.properties.SaxsLoaderMixin method)
from_cryson_fit() (idpflex.properties.SansLoaderMixin method)
from_cryson_int() (idpflex.properties.SansLoaderMixin method)
from_cryson_pdb() (idpflex.properties.SansLoaderMixin method)
from_dssp() (idpflex.properties.SecondaryStructureProperty method)
from_dssp_pdb() (idpflex.properties.SecondaryStructureProperty method)
from_dssp_sequence() (idpflex.properties.SecondaryStructureProperty method)
from_linkage_matrix() (idpflex.cnextend.Tree method)
from_mdtraj() (idpflex.properties.SaSaMixin method)
from_pdb() (idpflex.properties.AsphericityMixin method)
(idpflex.properties.EndToEndMixin method)
(idpflex.properties.RadiusOfGyrationMixin method)
(idpflex.properties.ResidueContactMap method)
(idpflex.properties.SaSaMixin method)
from_sassena() (idpflex.properties.SansLoaderMixin method)
from_universe() (idpflex.properties.AsphericityMixin method)
(idpflex.properties.EndToEndMixin method)
(idpflex.properties.RadiusOfGyrationMixin method)
(idpflex.properties.ResidueContactMap method)
(idpflex.properties.SaSaMixin method)
G
generate_distance_matrix() (in module idpflex.distances)
get() (idpflex.properties.PropertyDict method)
guess() (idpflex.bayes.TabulatedFunctionModel method)
H
histogram() (idpflex.properties.ScalarProperty method)
I
idpflex.bayes (module)
idpflex.cluster (module)
idpflex.cnextend (module)
idpflex.distances (module)
idpflex.properties (module)
idpflex.utils (module)
items() (idpflex.properties.PropertyDict method)
K
keys() (idpflex.cluster.ClusterTrove method)
(idpflex.properties.PropertyDict method)
L
leaf_ids() (idpflex.cnextend.ClusterNodeX property)
leafs() (idpflex.cnextend.ClusterNodeX property)
(idpflex.cnextend.Tree property)
load_cluster_trove() (in module idpflex.cluster)
load_tree() (in module idpflex.cnextend)
M
model_at_depth() (in module idpflex.bayes)
model_at_node() (in module idpflex.bayes)
N
n_codes (idpflex.properties.SecondaryStructureProperty attribute)
name() (idpflex.properties.ProfileProperty property)
(idpflex.properties.ResidueContactMap property)
(idpflex.properties.SecondaryStructureProperty property)
namedtuplefy() (in module idpflex.utils)
nodes_above_depth() (idpflex.cnextend.Tree method)
nodes_at_depth() (idpflex.cnextend.Tree method)
P
plot() (idpflex.properties.ResidueContactMap method)
(idpflex.properties.ScalarProperty method)
(idpflex.properties.SecondaryStructureProperty method)
ProfileProperty (class in idpflex.properties)
propagator_size_weighted_sum() (in module idpflex.cluster)
(in module idpflex.properties)
propagator_weighted_sum() (in module idpflex.properties)
PropertyDict (class in idpflex.properties)
R
RadiusOfGyration (class in idpflex.properties)
RadiusOfGyrationMixin (class in idpflex.properties)
random_distance_tree() (in module idpflex.cnextend)
register_as_node_property() (in module idpflex.properties)
representative() (idpflex.cnextend.ClusterNodeX method)
ResidueContactMap (class in idpflex.properties)
rg() (idpflex.properties.RadiusOfGyration property)
rmsd_matrix() (in module idpflex.distances)
S
SansLoaderMixin (class in idpflex.properties)
SansProperty (class in idpflex.properties)
SaSa (class in idpflex.properties)
sasa() (idpflex.properties.SaSa property)
SaSaMixin (class in idpflex.properties)
save() (idpflex.cluster.ClusterTrove method)
(idpflex.cnextend.Tree method)
SaxsLoaderMixin (class in idpflex.properties)
SaxsProperty (class in idpflex.properties)
ScalarProperty (class in idpflex.properties)
SecondaryStructureProperty (class in idpflex.properties)
set_scalar() (idpflex.properties.ScalarProperty method)
T
TabulatedFunctionModel (class in idpflex.bayes)
temporary_file() (in module idpflex.utils)
to_ascii() (idpflex.properties.SansLoaderMixin method)
(idpflex.properties.SaxsLoaderMixin method)
trajectory_centroids() (in module idpflex.cluster)
Tree (class in idpflex.cnextend)
tree() (idpflex.cnextend.ClusterNodeX property)
V
values() (idpflex.properties.PropertyDict method)
W
weights_by_size() (in module idpflex.properties)
write_frame() (in module idpflex.utils)
X
x() (idpflex.properties.ProfileProperty property)
(idpflex.properties.ResidueContactMap property)
(idpflex.properties.SecondaryStructureProperty property)
Y
y() (idpflex.properties.ProfileProperty property)
(idpflex.properties.ResidueContactMap property)
(idpflex.properties.SecondaryStructureProperty property)
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